Strain Fitness in Shewanella sp. ANA-3 around Shewana3_4143

Experiment: L-Asparagine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_4142 and Shewana3_4143 are separated by 83 nucleotidesShewana3_4143 and Shewana3_4144 are separated by 43 nucleotidesShewana3_4144 and Shewana3_4145 are separated by 36 nucleotides Shewana3_4142: Shewana3_4142 - IS4 family transposase (RefSeq), at 1,491 to 2,471 _4142 Shewana3_4143: Shewana3_4143 - hypothetical protein (RefSeq), at 2,555 to 2,836 _4143 Shewana3_4144: Shewana3_4144 - plastocyanin domain-containing protein (RefSeq), at 2,880 to 3,239 _4144 Shewana3_4145: Shewana3_4145 - copper-translocating P-type ATPase (RefSeq), at 3,276 to 5,612 _4145 Position (kb) 2 3Strain fitness (log2 ratio) -1 0 1 2at 1.596 kb on - strand, within Shewana3_4142at 1.689 kb on - strand, within Shewana3_4142at 1.980 kb on - strand, within Shewana3_4142at 2.130 kb on - strand, within Shewana3_4142at 2.130 kb on - strand, within Shewana3_4142at 2.181 kb on - strand, within Shewana3_4142at 2.252 kb on + strand, within Shewana3_4142at 2.276 kb on - strand, within Shewana3_4142at 2.337 kb on - strand, within Shewana3_4142at 2.352 kb on - strand, within Shewana3_4142at 2.545 kb on - strandat 2.898 kb on + strandat 2.903 kb on + strandat 2.906 kb on - strandat 3.106 kb on + strand, within Shewana3_4144at 3.209 kb on + strandat 3.231 kb on - strandat 3.321 kb on - strandat 3.486 kb on - strandat 3.501 kb on + strandat 3.828 kb on - strand, within Shewana3_4145

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (N)
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1,596 - Shewana3_4142 0.11 +0.6
1,689 - Shewana3_4142 0.20 -0.6
1,980 - Shewana3_4142 0.50 -1.6
2,130 - Shewana3_4142 0.65 +0.9
2,130 - Shewana3_4142 0.65 +0.8
2,181 - Shewana3_4142 0.70 +1.8
2,252 + Shewana3_4142 0.78 -0.2
2,276 - Shewana3_4142 0.80 +0.4
2,337 - Shewana3_4142 0.86 -0.3
2,352 - Shewana3_4142 0.88 +0.7
2,545 - +0.7
2,898 + +0.3
2,903 + -1.4
2,906 - -1.5
3,106 + Shewana3_4144 0.63 -1.2
3,209 + -0.2
3,231 - +0.3
3,321 - +0.9
3,486 - +0.2
3,501 + -0.8
3,828 - Shewana3_4145 0.24 +0.3

Or see this region's nucleotide sequence