Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_3747 and Shew_3748 are separated by 62 nucleotides Shew_3748 and Shew_3749 overlap by 4 nucleotides Shew_3749 and Shew_3750 are separated by 108 nucleotides Shew_3750 and Shew_3751 are separated by 75 nucleotides
Shew_3747: Shew_3747 - hypothetical protein (RefSeq), at 4,464,226 to 4,465,848
_3747
Shew_3748: Shew_3748 - hypothetical protein (RefSeq), at 4,465,911 to 4,466,717
_3748
Shew_3749: Shew_3749 - hypothetical protein (RefSeq), at 4,466,714 to 4,467,136
_3749
Shew_3750: Shew_3750 - phospholipid/glycerol acyltransferase (RefSeq), at 4,467,245 to 4,467,796
_3750
Shew_3751: Shew_3751 - lysine exporter protein LysE/YggA (RefSeq), at 4,467,872 to 4,468,495
_3751
Position (kb) 4466
4467
4468 Strain fitness (log2 ratio) -1
0
1 at 4466.071 kb on + strand, within Shew_3748 at 4466.079 kb on - strand, within Shew_3748 at 4466.079 kb on - strand, within Shew_3748 at 4466.130 kb on - strand, within Shew_3748 at 4466.130 kb on - strand, within Shew_3748 at 4466.504 kb on - strand, within Shew_3748 at 4466.504 kb on - strand, within Shew_3748 at 4466.504 kb on - strand, within Shew_3748 at 4466.588 kb on + strand, within Shew_3748 at 4467.234 kb on - strand at 4467.382 kb on - strand, within Shew_3750 at 4467.809 kb on - strand at 4467.949 kb on + strand, within Shew_3751 at 4468.006 kb on - strand, within Shew_3751 at 4468.011 kb on - strand, within Shew_3751 at 4468.083 kb on + strand, within Shew_3751
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 4,466,071 + Shew_3748 0.20 +0.7 4,466,079 - Shew_3748 0.21 +0.3 4,466,079 - Shew_3748 0.21 +0.1 4,466,130 - Shew_3748 0.27 +0.6 4,466,130 - Shew_3748 0.27 +0.2 4,466,504 - Shew_3748 0.73 +0.1 4,466,504 - Shew_3748 0.73 +0.0 4,466,504 - Shew_3748 0.73 +0.4 4,466,588 + Shew_3748 0.84 -0.2 4,467,234 - -0.8 4,467,382 - Shew_3750 0.25 +1.6 4,467,809 - +0.0 4,467,949 + Shew_3751 0.12 -0.4 4,468,006 - Shew_3751 0.21 -0.2 4,468,011 - Shew_3751 0.22 +0.2 4,468,083 + Shew_3751 0.34 +0.2
Or see this region's nucleotide sequence