Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_3613 and Shew_3614 overlap by 20 nucleotides Shew_3614 and Shew_3615 overlap by 8 nucleotides Shew_3615 and Shew_3616 are separated by 20 nucleotides Shew_3616 and Shew_3617 are separated by 71 nucleotides
Shew_3613: Shew_3613 - general secretion pathway protein J (RefSeq), at 4,310,779 to 4,311,558
_3613
Shew_3614: Shew_3614 - general secretion pathway protein I (RefSeq), at 4,311,539 to 4,311,943
_3614
Shew_3615: Shew_3615 - general secretion pathway protein H (RefSeq), at 4,311,936 to 4,312,514
_3615
Shew_3616: Shew_3616 - general secretion pathway protein G (RefSeq), at 4,312,535 to 4,312,969
_3616
Shew_3617: Shew_3617 - general secretion pathway protein F (RefSeq), at 4,313,041 to 4,314,261
_3617
Position (kb) 4311
4312
4313 Strain fitness (log2 ratio) -1
0
1
2
3 at 4310.958 kb on - strand, within Shew_3613 at 4310.978 kb on + strand, within Shew_3613 at 4310.986 kb on - strand, within Shew_3613 at 4311.022 kb on + strand, within Shew_3613 at 4311.027 kb on + strand, within Shew_3613 at 4311.035 kb on - strand, within Shew_3613 at 4311.073 kb on + strand, within Shew_3613 at 4311.110 kb on + strand, within Shew_3613 at 4311.110 kb on + strand, within Shew_3613 at 4311.449 kb on + strand, within Shew_3613 at 4311.527 kb on - strand at 4311.574 kb on - strand at 4311.824 kb on - strand, within Shew_3614 at 4311.930 kb on - strand at 4311.973 kb on - strand at 4311.975 kb on + strand at 4311.975 kb on + strand at 4311.983 kb on - strand at 4311.983 kb on - strand at 4312.409 kb on - strand, within Shew_3615 at 4312.526 kb on + strand at 4312.534 kb on - strand at 4312.625 kb on - strand, within Shew_3616 at 4312.975 kb on - strand at 4313.153 kb on - strand at 4313.153 kb on - strand at 4313.301 kb on + strand, within Shew_3617
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 4,310,958 - Shew_3613 0.23 -0.5 4,310,978 + Shew_3613 0.26 -1.1 4,310,986 - Shew_3613 0.27 -1.4 4,311,022 + Shew_3613 0.31 +1.4 4,311,027 + Shew_3613 0.32 -0.9 4,311,035 - Shew_3613 0.33 +2.1 4,311,073 + Shew_3613 0.38 -1.6 4,311,110 + Shew_3613 0.42 -0.4 4,311,110 + Shew_3613 0.42 -1.1 4,311,449 + Shew_3613 0.86 -1.7 4,311,527 - +1.9 4,311,574 - +0.2 4,311,824 - Shew_3614 0.70 -0.5 4,311,930 - +0.4 4,311,973 - +0.6 4,311,975 + -0.4 4,311,975 + +1.6 4,311,983 - +0.3 4,311,983 - +0.5 4,312,409 - Shew_3615 0.82 +0.4 4,312,526 + -0.6 4,312,534 - +3.4 4,312,625 - Shew_3616 0.21 -0.4 4,312,975 - +0.9 4,313,153 - -0.1 4,313,153 - +2.4 4,313,301 + Shew_3617 0.21 +0.4
Or see this region's nucleotide sequence