Strain Fitness in Shewanella loihica PV-4 around Shew_3453

Experiment: LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShew_3452 and Shew_3453 overlap by 8 nucleotidesShew_3453 and Shew_3454 are separated by 0 nucleotides Shew_3452: Shew_3452 - UDP-N-acetylmuramate--alanine ligase (RefSeq), at 4,133,744 to 4,135,198 _3452 Shew_3453: Shew_3453 - UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase (RefSeq), at 4,135,191 to 4,136,285 _3453 Shew_3454: Shew_3454 - cell division protein FtsW (RefSeq), at 4,136,286 to 4,137,500 _3454 Position (kb) 4135 4136 4137Strain fitness (log2 ratio) -2 -1 0 1at 4136.306 kb on - strandat 4136.306 kb on - strandat 4136.306 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB
remove
4,136,306 - -2.1
4,136,306 - +0.2
4,136,306 - -0.4

Or see this region's nucleotide sequence