Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_3439 and Shew_3440 are separated by 38 nucleotides Shew_3440 and Shew_3441 are separated by 20 nucleotides Shew_3441 and Shew_3442 are separated by 8 nucleotides Shew_3442 and Shew_3443 are separated by 36 nucleotides
Shew_3439: Shew_3439 - type II secretion system protein (RefSeq), at 4,107,121 to 4,108,389
_3439
Shew_3440: Shew_3440 - prepilin peptidase (RefSeq), at 4,108,428 to 4,109,339
_3440
Shew_3441: Shew_3441 - dephospho-CoA kinase (RefSeq), at 4,109,360 to 4,109,965
_3441
Shew_3442: Shew_3442 - hypothetical protein (RefSeq), at 4,109,974 to 4,110,708
_3442
Shew_3443: Shew_3443 - hypothetical protein (RefSeq), at 4,110,745 to 4,110,969
_3443
Position (kb) 4109
4110 Strain fitness (log2 ratio) -1
0
1 at 4108.368 kb on + strand at 4108.452 kb on + strand at 4108.452 kb on + strand at 4108.542 kb on - strand, within Shew_3440 at 4108.705 kb on - strand, within Shew_3440 at 4108.899 kb on - strand, within Shew_3440 at 4109.097 kb on + strand, within Shew_3440 at 4109.954 kb on + strand at 4110.018 kb on + strand at 4110.023 kb on + strand at 4110.023 kb on + strand at 4110.024 kb on + strand at 4110.024 kb on + strand at 4110.024 kb on + strand at 4110.029 kb on + strand at 4110.029 kb on + strand at 4110.031 kb on - strand at 4110.031 kb on - strand at 4110.037 kb on - strand at 4110.054 kb on - strand, within Shew_3442 at 4110.547 kb on + strand, within Shew_3442 at 4110.777 kb on - strand, within Shew_3443 at 4110.842 kb on + strand, within Shew_3443
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 4,108,368 + -0.1 4,108,452 + +0.0 4,108,452 + +0.3 4,108,542 - Shew_3440 0.12 -0.2 4,108,705 - Shew_3440 0.30 +0.9 4,108,899 - Shew_3440 0.52 -0.9 4,109,097 + Shew_3440 0.73 -1.3 4,109,954 + +1.1 4,110,018 + -0.6 4,110,023 + +1.5 4,110,023 + -0.1 4,110,024 + -0.3 4,110,024 + -0.0 4,110,024 + -0.4 4,110,029 + +0.3 4,110,029 + -1.3 4,110,031 - -1.3 4,110,031 - +0.2 4,110,037 - +0.5 4,110,054 - Shew_3442 0.11 +0.1 4,110,547 + Shew_3442 0.78 +0.1 4,110,777 - Shew_3443 0.14 +0.5 4,110,842 + Shew_3443 0.43 -0.2
Or see this region's nucleotide sequence