Strain Fitness in Shewanella loihica PV-4 around Shew_3429

Experiment: LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShew_3428 and Shew_3429 are separated by 142 nucleotidesShew_3429 and Shew_3430 are separated by 153 nucleotides Shew_3428: Shew_3428 - diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) (RefSeq), at 4,087,739 to 4,092,193 _3428 Shew_3429: Shew_3429 - dihydrolipoamide dehydrogenase (RefSeq), at 4,092,336 to 4,093,763 _3429 Shew_3430: Shew_3430 - pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase (RefSeq), at 4,093,917 to 4,095,869 _3430 Position (kb) 4092 4093 4094Strain fitness (log2 ratio) -1 0 1at 4091.442 kb on + strand, within Shew_3428at 4091.589 kb on - strand, within Shew_3428at 4091.663 kb on + strand, within Shew_3428at 4091.721 kb on - strand, within Shew_3428at 4091.758 kb on - strandat 4092.008 kb on + strandat 4092.018 kb on + strandat 4092.021 kb on - strandat 4092.051 kb on - strandat 4092.366 kb on - strandat 4094.112 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB
remove
4,091,442 + Shew_3428 0.83 -0.4
4,091,589 - Shew_3428 0.86 -0.5
4,091,663 + Shew_3428 0.88 -0.6
4,091,721 - Shew_3428 0.89 +0.4
4,091,758 - +0.8
4,092,008 + +0.2
4,092,018 + -0.1
4,092,021 - -0.1
4,092,051 - -0.1
4,092,366 - +0.6
4,094,112 + +1.5

Or see this region's nucleotide sequence