Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_3313 and Shew_3314 overlap by 4 nucleotides Shew_3314 and Shew_3315 overlap by 8 nucleotides Shew_3315 and Shew_3316 are separated by 100 nucleotides
Shew_3313: Shew_3313 - PTS IIA-like nitrogen-regulatory protein PtsN (RefSeq), at 3,953,401 to 3,953,844
_3313
Shew_3314: Shew_3314 - hypothetical protein (RefSeq), at 3,953,841 to 3,954,689
_3314
Shew_3315: Shew_3315 - phosphotransferase system, phosphocarrier protein HPr (RefSeq), at 3,954,682 to 3,954,957
_3315
Shew_3316: Shew_3316 - magnesium transporter (RefSeq), at 3,955,058 to 3,956,425
_3316
Position (kb) 3954
3955 Strain fitness (log2 ratio) -1
0
1 at 3954.150 kb on - strand, within Shew_3314 at 3954.661 kb on - strand at 3954.696 kb on - strand at 3954.761 kb on - strand, within Shew_3315 at 3955.078 kb on - strand at 3955.217 kb on + strand, within Shew_3316 at 3955.371 kb on - strand, within Shew_3316 at 3955.406 kb on + strand, within Shew_3316 at 3955.793 kb on + strand, within Shew_3316 at 3955.937 kb on - strand, within Shew_3316
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 3,954,150 - Shew_3314 0.36 +0.7 3,954,661 - +0.3 3,954,696 - +0.5 3,954,761 - Shew_3315 0.29 -0.0 3,955,078 - -0.1 3,955,217 + Shew_3316 0.12 +0.2 3,955,371 - Shew_3316 0.23 -0.0 3,955,406 + Shew_3316 0.25 +0.3 3,955,793 + Shew_3316 0.54 -0.3 3,955,937 - Shew_3316 0.64 +0.0
Or see this region's nucleotide sequence