Strain Fitness in Shewanella loihica PV-4 around Shew_3265

Experiment: LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShew_3264 and Shew_3265 are separated by 525 nucleotidesShew_3265 and dipZ overlap by 4 nucleotides Shew_3264: Shew_3264 - FxsA cytoplasmic membrane protein (RefSeq), at 3,902,711 to 3,903,304 _3264 Shew_3265: Shew_3265 - CutA1 divalent ion tolerance protein (RefSeq), at 3,903,830 to 3,904,153 _3265 Shew_3266: dipZ - thiol:disulfide interchange protein precursor (RefSeq), at 3,904,150 to 3,905,958 dipZ Position (kb) 3903 3904 3905Strain fitness (log2 ratio) -1 0 1at 3902.919 kb on - strand, within Shew_3264at 3902.954 kb on - strand, within Shew_3264at 3903.076 kb on - strand, within Shew_3264at 3903.221 kb on + strand, within Shew_3264at 3903.421 kb on - strandat 3903.680 kb on - strandat 3903.788 kb on + strandat 3903.956 kb on + strand, within Shew_3265at 3904.763 kb on - strand, within dipZ

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB
remove
3,902,919 - Shew_3264 0.35 +0.8
3,902,954 - Shew_3264 0.41 +0.3
3,903,076 - Shew_3264 0.61 -0.7
3,903,221 + Shew_3264 0.86 -1.0
3,903,421 - -0.3
3,903,680 - +1.5
3,903,788 + +0.1
3,903,956 + Shew_3265 0.39 +0.9
3,904,763 - dipZ Shew_3266 0.34 +0.5

Or see this region's nucleotide sequence