Strain Fitness in Shewanella loihica PV-4 around Shew_3218

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_3217 and Shew_3218 are separated by 75 nucleotidesShew_3218 and Shew_3219 are separated by 120 nucleotides Shew_3217: Shew_3217 - sodium/hydrogen exchanger (RefSeq), at 3,836,432 to 3,837,625 _3217 Shew_3218: Shew_3218 - carbamoyl-phosphate synthase L chain, ATP-binding (RefSeq), at 3,837,701 to 3,842,251 _3218 Shew_3219: Shew_3219 - LysR family transcriptional regulator (RefSeq), at 3,842,372 to 3,843,283 _3219 Position (kb) 3837 3838 3839 3840 3841 3842 3843Strain fitness (log2 ratio) -2 -1 0 1at 3836.840 kb on + strand, within Shew_3217at 3836.967 kb on - strand, within Shew_3217at 3837.049 kb on + strand, within Shew_3217at 3837.182 kb on - strand, within Shew_3217at 3837.421 kb on - strand, within Shew_3217at 3837.638 kb on + strandat 3837.638 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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3,836,840 + Shew_3217 0.34 -0.6
3,836,967 - Shew_3217 0.45 -2.5
3,837,049 + Shew_3217 0.52 -0.2
3,837,182 - Shew_3217 0.63 -0.3
3,837,421 - Shew_3217 0.83 +0.1
3,837,638 + -0.6
3,837,638 + +0.1

Or see this region's nucleotide sequence