Strain Fitness in Shewanella loihica PV-4 around Shew_3177

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_3176 and Shew_3177 are separated by 50 nucleotidesShew_3177 and Shew_3178 are separated by 632 nucleotides Shew_3176: Shew_3176 - regulatory protein GntR, HTH (RefSeq), at 3,781,321 to 3,782,049 _3176 Shew_3177: Shew_3177 - hypothetical protein (RefSeq), at 3,782,100 to 3,782,624 _3177 Shew_3178: Shew_3178 - Na+/H+ antiporter NhaC (RefSeq), at 3,783,257 to 3,784,588 _3178 Position (kb) 3782 3783Strain fitness (log2 ratio) -2 -1 0 1at 3781.139 kb on - strandat 3781.265 kb on + strandat 3781.423 kb on - strand, within Shew_3176at 3782.132 kb on + strandat 3782.207 kb on + strand, within Shew_3177at 3782.272 kb on - strand, within Shew_3177at 3782.272 kb on - strand, within Shew_3177at 3782.577 kb on + strandat 3783.186 kb on + strandat 3783.449 kb on - strand, within Shew_3178

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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3,781,139 - -1.5
3,781,265 + +0.2
3,781,423 - Shew_3176 0.14 +1.0
3,782,132 + +0.0
3,782,207 + Shew_3177 0.20 -0.9
3,782,272 - Shew_3177 0.33 +0.7
3,782,272 - Shew_3177 0.33 +0.1
3,782,577 + -2.2
3,783,186 + -0.1
3,783,449 - Shew_3178 0.14 -2.2

Or see this region's nucleotide sequence