Strain Fitness in Shewanella loihica PV-4 around Shew_3133

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_3131 and Shew_3132 overlap by 1 nucleotidesShew_3132 and Shew_3133 are separated by 95 nucleotidesShew_3133 and Shew_3134 are separated by 16 nucleotides Shew_3131: Shew_3131 - poly(A) polymerase (RefSeq), at 3,722,971 to 3,724,413 _3131 Shew_3132: Shew_3132 - 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase (RefSeq), at 3,724,413 to 3,724,901 _3132 Shew_3133: Shew_3133 - 3-methyl-2-oxobutanoate hydroxymethyltransferase (RefSeq), at 3,724,997 to 3,725,791 _3133 Shew_3134: Shew_3134 - pantoate--beta-alanine ligase (RefSeq), at 3,725,808 to 3,726,656 _3134 Position (kb) 3724 3725 3726Strain fitness (log2 ratio) -1 0 1 2at 3724.239 kb on + strand, within Shew_3131at 3724.310 kb on + strandat 3726.650 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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3,724,239 + Shew_3131 0.88 +0.8
3,724,310 + +2.3
3,726,650 + +0.0

Or see this region's nucleotide sequence