Strain Fitness in Shewanella loihica PV-4 around Shew_3061

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_3060 and Shew_3061 are separated by 234 nucleotidesShew_3061 and Shew_3062 are separated by 568 nucleotides Shew_3060: Shew_3060 - hypothetical protein (RefSeq), at 3,631,146 to 3,633,872 _3060 Shew_3061: Shew_3061 - hypothetical protein (RefSeq), at 3,634,107 to 3,634,916 _3061 Shew_3062: Shew_3062 - glycine dehydrogenase (RefSeq), at 3,635,485 to 3,638,373 _3062 Position (kb) 3634 3635Strain fitness (log2 ratio) -1 0 1 2at 3633.121 kb on + strand, within Shew_3060at 3633.738 kb on - strandat 3633.852 kb on - strandat 3634.017 kb on - strandat 3634.065 kb on + strandat 3634.121 kb on - strandat 3634.880 kb on - strandat 3634.942 kb on - strandat 3635.017 kb on - strandat 3635.121 kb on - strandat 3635.214 kb on + strandat 3635.418 kb on + strandat 3635.513 kb on - strandat 3635.620 kb on + strandat 3635.667 kb on + strandat 3635.782 kb on - strand, within Shew_3062

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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3,633,121 + Shew_3060 0.72 -0.7
3,633,738 - +0.7
3,633,852 - -0.2
3,634,017 - -0.9
3,634,065 + -0.8
3,634,121 - -0.2
3,634,880 - -1.0
3,634,942 - +0.1
3,635,017 - -0.9
3,635,121 - +0.9
3,635,214 + +0.7
3,635,418 + +2.0
3,635,513 - +0.2
3,635,620 + +0.3
3,635,667 + +1.1
3,635,782 - Shew_3062 0.10 +0.2

Or see this region's nucleotide sequence