Strain Fitness in Shewanella loihica PV-4 around Shew_3008

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_3007 and Shew_3008 are separated by 213 nucleotidesShew_3008 and Shew_3009 are separated by 436 nucleotides Shew_3007: Shew_3007 - LysR family transcriptional regulator (RefSeq), at 3,570,632 to 3,571,525 _3007 Shew_3008: Shew_3008 - PpiC-type peptidyl-prolyl cis-trans isomerase (RefSeq), at 3,571,739 to 3,572,017 _3008 Shew_3009: Shew_3009 - transposase IS116/IS110/IS902 family protein (RefSeq), at 3,572,454 to 3,573,467 _3009 Position (kb) 3571 3572 3573Strain fitness (log2 ratio) -1 0 1 2at 3570.802 kb on + strand, within Shew_3007at 3570.810 kb on - strand, within Shew_3007at 3570.862 kb on + strand, within Shew_3007at 3570.947 kb on - strand, within Shew_3007at 3571.345 kb on + strand, within Shew_3007at 3571.604 kb on + strandat 3571.609 kb on + strandat 3571.670 kb on + strandat 3571.921 kb on - strand, within Shew_3008at 3572.032 kb on - strandat 3572.164 kb on - strandat 3572.173 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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3,570,802 + Shew_3007 0.19 +0.5
3,570,810 - Shew_3007 0.20 -0.1
3,570,862 + Shew_3007 0.26 +1.0
3,570,947 - Shew_3007 0.35 -0.5
3,571,345 + Shew_3007 0.80 +0.2
3,571,604 + -0.0
3,571,609 + +2.4
3,571,670 + -0.1
3,571,921 - Shew_3008 0.65 -0.7
3,572,032 - -0.0
3,572,164 - +0.1
3,572,173 + +0.3

Or see this region's nucleotide sequence