Strain Fitness in Shewanella loihica PV-4 around Shew_2940

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2939 and Shew_2940 are separated by 134 nucleotidesShew_2940 and Shew_2941 are separated by 89 nucleotidesShew_2941 and Shew_2942 are separated by 1 nucleotides Shew_2939: Shew_2939 - Serine-type D-Ala-D-Ala carboxypeptidase (RefSeq), at 3,478,697 to 3,479,869 _2939 Shew_2940: Shew_2940 - hypothetical protein (RefSeq), at 3,480,004 to 3,480,270 _2940 Shew_2941: Shew_2941 - lipoate-protein ligase B (RefSeq), at 3,480,360 to 3,481,016 _2941 Shew_2942: Shew_2942 - lipoyl synthase (RefSeq), at 3,481,018 to 3,481,983 _2942 Position (kb) 3480 3481Strain fitness (log2 ratio) -1 0 1at 3479.131 kb on - strand, within Shew_2939at 3479.157 kb on - strand, within Shew_2939at 3479.231 kb on + strand, within Shew_2939at 3479.457 kb on + strand, within Shew_2939at 3479.518 kb on - strand, within Shew_2939at 3479.795 kb on - strandat 3479.795 kb on - strandat 3479.795 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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3,479,131 - Shew_2939 0.37 -0.1
3,479,157 - Shew_2939 0.39 -0.2
3,479,231 + Shew_2939 0.46 +0.6
3,479,457 + Shew_2939 0.65 +1.5
3,479,518 - Shew_2939 0.70 -0.0
3,479,795 - -1.4
3,479,795 - -1.2
3,479,795 - -1.4

Or see this region's nucleotide sequence