Strain Fitness in Shewanella loihica PV-4 around Shew_2920

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2919 and Shew_2920 are separated by 70 nucleotidesShew_2920 and Shew_2921 are separated by 103 nucleotides Shew_2919: Shew_2919 - translation-associated GTPase (RefSeq), at 3,457,797 to 3,458,888 _2919 Shew_2920: Shew_2920 - peptidyl-tRNA hydrolase (RefSeq), at 3,458,959 to 3,459,546 _2920 Shew_2921: Shew_2921 - UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase (RefSeq), at 3,459,650 to 3,460,843 _2921 Position (kb) 3458 3459 3460Strain fitness (log2 ratio) -1 0 1at 3458.088 kb on + strand, within Shew_2919at 3458.500 kb on + strand, within Shew_2919at 3458.828 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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3,458,088 + Shew_2919 0.27 -0.0
3,458,500 + Shew_2919 0.64 -0.9
3,458,828 - +0.4

Or see this region's nucleotide sequence