Strain Fitness in Shewanella loihica PV-4 around Shew_2844

Experiment: LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShew_2843 and Shew_2844 are separated by 148 nucleotidesShew_2844 and Shew_2845 are separated by 307 nucleotides Shew_2843: Shew_2843 - chaperone protein DnaJ (RefSeq), at 3,370,122 to 3,371,252 _2843 Shew_2844: Shew_2844 - chaperone protein DnaK (RefSeq), at 3,371,401 to 3,373,314 _2844 Shew_2845: Shew_2845 - hypothetical protein (RefSeq), at 3,373,622 to 3,374,548 _2845 Position (kb) 3371 3372 3373 3374Strain fitness (log2 ratio) -1 0 1 2at 3373.885 kb on + strand, within Shew_2845at 3373.893 kb on - strand, within Shew_2845at 3373.893 kb on - strand, within Shew_2845at 3373.911 kb on - strand, within Shew_2845at 3374.115 kb on - strand, within Shew_2845at 3374.171 kb on - strand, within Shew_2845at 3374.255 kb on + strand, within Shew_2845at 3374.307 kb on + strand, within Shew_2845

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB
remove
3,373,885 + Shew_2845 0.28 -0.1
3,373,893 - Shew_2845 0.29 +0.1
3,373,893 - Shew_2845 0.29 +1.9
3,373,911 - Shew_2845 0.31 +0.8
3,374,115 - Shew_2845 0.53 +0.3
3,374,171 - Shew_2845 0.59 +0.5
3,374,255 + Shew_2845 0.68 -0.1
3,374,307 + Shew_2845 0.74 +0.9

Or see this region's nucleotide sequence