Strain Fitness in Shewanella loihica PV-4 around Shew_2771

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2769 and Shew_2770 are separated by 0 nucleotidesShew_2770 and Shew_2771 are separated by 22 nucleotidesShew_2771 and Shew_2772 are separated by 85 nucleotidesShew_2772 and Shew_2773 are separated by 100 nucleotides Shew_2769: Shew_2769 - exodeoxyribonuclease VII, small subunit (RefSeq), at 3,274,622 to 3,274,861 _2769 Shew_2770: Shew_2770 - polyprenyl synthetase (RefSeq), at 3,274,862 to 3,275,743 _2770 Shew_2771: Shew_2771 - 1-deoxy-D-xylulose-5-phosphate synthase (RefSeq), at 3,275,766 to 3,277,634 _2771 Shew_2772: Shew_2772 - GrpE protein (RefSeq), at 3,277,720 to 3,278,337 _2772 Shew_2773: Shew_2773 - NAD(+) kinase (RefSeq), at 3,278,438 to 3,279,316 _2773 Position (kb) 3275 3276 3277 3278Strain fitness (log2 ratio) -1 0 1at 3275.625 kb on + strand, within Shew_2770

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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3,275,625 + Shew_2770 0.87 -1.7

Or see this region's nucleotide sequence