Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt xni and Shew_2757 are separated by 152 nucleotides Shew_2757 and Shew_2758 are separated by 23 nucleotides Shew_2758 and Shew_2759 are separated by 121 nucleotides
Shew_2756: xni - exonuclease IX (RefSeq), at 3,260,520 to 3,261,290
xni
Shew_2757: Shew_2757 - hypothetical protein (RefSeq), at 3,261,443 to 3,261,829
_2757
Shew_2758: Shew_2758 - hypothetical protein (RefSeq), at 3,261,853 to 3,262,335
_2758
Shew_2759: Shew_2759 - peptidase S9 prolyl oligopeptidase (RefSeq), at 3,262,457 to 3,265,270
_2759
Position (kb)
3261
3262
3263 Strain fitness (log2 ratio)
-1
0
1 at 3260.870 kb on + strand, within xni at 3260.870 kb on + strand, within xni at 3260.878 kb on - strand, within xni at 3260.971 kb on + strand, within xni at 3261.129 kb on + strand, within xni at 3261.624 kb on - strand, within Shew_2757 at 3261.675 kb on + strand, within Shew_2757 at 3261.675 kb on + strand, within Shew_2757 at 3261.836 kb on + strand at 3261.852 kb on + strand at 3261.860 kb on - strand at 3261.864 kb on + strand at 3262.491 kb on + strand at 3262.558 kb on + strand at 3262.953 kb on + strand, within Shew_2759 at 3263.063 kb on - strand, within Shew_2759 at 3263.205 kb on - strand, within Shew_2759 at 3263.294 kb on - strand, within Shew_2759
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 3,260,870 + xni Shew_2756 0.45 -0.2 3,260,870 + xni Shew_2756 0.45 -0.5 3,260,878 - xni Shew_2756 0.46 -0.6 3,260,971 + xni Shew_2756 0.58 -0.2 3,261,129 + xni Shew_2756 0.79 -0.7 3,261,624 - Shew_2757 0.47 -0.4 3,261,675 + Shew_2757 0.60 -0.3 3,261,675 + Shew_2757 0.60 -0.0 3,261,836 + -0.3 3,261,852 + +1.4 3,261,860 - -0.5 3,261,864 + +0.1 3,262,491 + -0.4 3,262,558 + +0.3 3,262,953 + Shew_2759 0.18 +0.1 3,263,063 - Shew_2759 0.22 -0.1 3,263,205 - Shew_2759 0.27 -0.4 3,263,294 - Shew_2759 0.30 -0.4
Or see this region's nucleotide sequence