Strain Fitness in Shewanella loihica PV-4 around Shew_2722

Experiment: LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShew_2720 and Shew_2721 are separated by 331 nucleotidesShew_2721 and Shew_2722 are separated by 81 nucleotidesShew_2722 and Shew_2723 are separated by 46 nucleotidesShew_2723 and Shew_2724 are separated by 94 nucleotides Shew_2720: Shew_2720 - peptidase S8 and S53, subtilisin, kexin, sedolisin (RefSeq), at 3,219,709 to 3,221,550 _2720 Shew_2721: Shew_2721 - hypothetical protein (RefSeq), at 3,221,882 to 3,222,154 _2721 Shew_2722: Shew_2722 - hypothetical protein (RefSeq), at 3,222,236 to 3,222,943 _2722 Shew_2723: Shew_2723 - NUDIX hydrolase (RefSeq), at 3,222,990 to 3,223,526 _2723 Shew_2724: Shew_2724 - indigoidine synthase A family protein (RefSeq), at 3,223,621 to 3,224,535 _2724 Position (kb) 3222 3223Strain fitness (log2 ratio) -2 -1 0 1at 3221.323 kb on + strand, within Shew_2720at 3221.333 kb on + strand, within Shew_2720at 3221.341 kb on - strand, within Shew_2720at 3221.413 kb on + strandat 3222.087 kb on - strand, within Shew_2721at 3222.340 kb on + strand, within Shew_2722at 3222.625 kb on + strand, within Shew_2722at 3222.633 kb on - strand, within Shew_2722at 3223.193 kb on + strand, within Shew_2723at 3223.247 kb on + strand, within Shew_2723at 3223.911 kb on + strand, within Shew_2724at 3223.911 kb on + strand, within Shew_2724at 3223.919 kb on - strand, within Shew_2724

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB
remove
3,221,323 + Shew_2720 0.88 -0.8
3,221,333 + Shew_2720 0.88 -0.1
3,221,341 - Shew_2720 0.89 -0.0
3,221,413 + -2.0
3,222,087 - Shew_2721 0.75 -0.8
3,222,340 + Shew_2722 0.15 -0.6
3,222,625 + Shew_2722 0.55 -0.9
3,222,633 - Shew_2722 0.56 +0.8
3,223,193 + Shew_2723 0.38 +0.8
3,223,247 + Shew_2723 0.48 -0.0
3,223,911 + Shew_2724 0.32 -1.0
3,223,911 + Shew_2724 0.32 +0.8
3,223,919 - Shew_2724 0.33 +0.2

Or see this region's nucleotide sequence