Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_2720 and Shew_2721 are separated by 331 nucleotides Shew_2721 and Shew_2722 are separated by 81 nucleotides Shew_2722 and Shew_2723 are separated by 46 nucleotides Shew_2723 and Shew_2724 are separated by 94 nucleotides
Shew_2720: Shew_2720 - peptidase S8 and S53, subtilisin, kexin, sedolisin (RefSeq), at 3,219,709 to 3,221,550
_2720
Shew_2721: Shew_2721 - hypothetical protein (RefSeq), at 3,221,882 to 3,222,154
_2721
Shew_2722: Shew_2722 - hypothetical protein (RefSeq), at 3,222,236 to 3,222,943
_2722
Shew_2723: Shew_2723 - NUDIX hydrolase (RefSeq), at 3,222,990 to 3,223,526
_2723
Shew_2724: Shew_2724 - indigoidine synthase A family protein (RefSeq), at 3,223,621 to 3,224,535
_2724
Position (kb)
3222
3223 Strain fitness (log2 ratio)
-2
-1
0
1 at 3221.323 kb on + strand, within Shew_2720 at 3221.333 kb on + strand, within Shew_2720 at 3221.341 kb on - strand, within Shew_2720 at 3221.413 kb on + strand at 3222.087 kb on - strand, within Shew_2721 at 3222.340 kb on + strand, within Shew_2722 at 3222.625 kb on + strand, within Shew_2722 at 3222.633 kb on - strand, within Shew_2722 at 3223.193 kb on + strand, within Shew_2723 at 3223.247 kb on + strand, within Shew_2723 at 3223.911 kb on + strand, within Shew_2724 at 3223.911 kb on + strand, within Shew_2724 at 3223.919 kb on - strand, within Shew_2724
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 3,221,323 + Shew_2720 0.88 -0.8 3,221,333 + Shew_2720 0.88 -0.1 3,221,341 - Shew_2720 0.89 -0.0 3,221,413 + -2.0 3,222,087 - Shew_2721 0.75 -0.8 3,222,340 + Shew_2722 0.15 -0.6 3,222,625 + Shew_2722 0.55 -0.9 3,222,633 - Shew_2722 0.56 +0.8 3,223,193 + Shew_2723 0.38 +0.8 3,223,247 + Shew_2723 0.48 -0.0 3,223,911 + Shew_2724 0.32 -1.0 3,223,911 + Shew_2724 0.32 +0.8 3,223,919 - Shew_2724 0.33 +0.2
Or see this region's nucleotide sequence