Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_2573 and Shew_2574 are separated by 2 nucleotides Shew_2574 and Shew_2575 are separated by 46 nucleotides Shew_2575 and Shew_2576 are separated by 12 nucleotides Shew_2576 and Shew_2577 are separated by 90 nucleotides
Shew_2573: Shew_2573 - carbamoyl-phosphate synthase L chain, ATP-binding (RefSeq), at 3,032,237 to 3,034,270
_2573
Shew_2574: Shew_2574 - pyruvate carboxyltransferase (RefSeq), at 3,034,273 to 3,035,178
_2574
Shew_2575: Shew_2575 - 3-oxoacid CoA-transferase, A subunit (RefSeq), at 3,035,225 to 3,035,926
_2575
Shew_2576: Shew_2576 - 3-oxoacid CoA-transferase, B subunit (RefSeq), at 3,035,939 to 3,036,595
_2576
Shew_2577: Shew_2577 - methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor (RefSeq), at 3,036,686 to 3,038,260
_2577
Position (kb) 3035
3036 Strain fitness (log2 ratio) -1
0
1 at 3034.609 kb on - strand, within Shew_2574 at 3035.162 kb on - strand at 3036.139 kb on - strand, within Shew_2576 at 3036.202 kb on - strand, within Shew_2576 at 3036.597 kb on - strand at 3036.786 kb on + strand at 3036.786 kb on - strand at 3036.804 kb on - strand at 3036.893 kb on - strand, within Shew_2577
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 3,034,609 - Shew_2574 0.37 +0.8 3,035,162 - -0.0 3,036,139 - Shew_2576 0.30 +0.4 3,036,202 - Shew_2576 0.40 -0.4 3,036,597 - -0.5 3,036,786 + -0.2 3,036,786 - +0.9 3,036,804 - +0.2 3,036,893 - Shew_2577 0.13 +0.6
Or see this region's nucleotide sequence