Strain Fitness in Shewanella loihica PV-4 around Shew_2574

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2573 and Shew_2574 are separated by 2 nucleotidesShew_2574 and Shew_2575 are separated by 46 nucleotidesShew_2575 and Shew_2576 are separated by 12 nucleotides Shew_2573: Shew_2573 - carbamoyl-phosphate synthase L chain, ATP-binding (RefSeq), at 3,032,237 to 3,034,270 _2573 Shew_2574: Shew_2574 - pyruvate carboxyltransferase (RefSeq), at 3,034,273 to 3,035,178 _2574 Shew_2575: Shew_2575 - 3-oxoacid CoA-transferase, A subunit (RefSeq), at 3,035,225 to 3,035,926 _2575 Shew_2576: Shew_2576 - 3-oxoacid CoA-transferase, B subunit (RefSeq), at 3,035,939 to 3,036,595 _2576 Position (kb) 3034 3035 3036Strain fitness (log2 ratio) -1 0 1at 3033.542 kb on + strand, within Shew_2573at 3033.758 kb on - strand, within Shew_2573at 3033.822 kb on + strand, within Shew_2573at 3034.033 kb on + strand, within Shew_2573at 3034.124 kb on + strandat 3034.609 kb on - strand, within Shew_2574at 3035.162 kb on - strandat 3036.139 kb on - strand, within Shew_2576

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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3,033,542 + Shew_2573 0.64 +0.9
3,033,758 - Shew_2573 0.75 +1.0
3,033,822 + Shew_2573 0.78 +1.0
3,034,033 + Shew_2573 0.88 +1.0
3,034,124 + +0.9
3,034,609 - Shew_2574 0.37 +0.8
3,035,162 - -0.0
3,036,139 - Shew_2576 0.30 +0.4

Or see this region's nucleotide sequence