Strain Fitness in Shewanella loihica PV-4 around Shew_2516

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2514 and Shew_2515 are separated by 250 nucleotidesShew_2515 and Shew_2516 are separated by 83 nucleotidesShew_2516 and Shew_2517 are separated by 205 nucleotides Shew_2514: Shew_2514 - tRNA--hydroxylase (RefSeq), at 2,957,742 to 2,958,512 _2514 Shew_2515: Shew_2515 - hypothetical protein (RefSeq), at 2,958,763 to 2,959,359 _2515 Shew_2516: Shew_2516 - glutaminyl-tRNA synthetase (RefSeq), at 2,959,443 to 2,961,113 _2516 Shew_2517: Shew_2517 - ferrous iron transport protein B (RefSeq), at 2,961,319 to 2,963,613 _2517 Position (kb) 2959 2960 2961 2962Strain fitness (log2 ratio) -1 0 1 2at 2959.193 kb on + strand, within Shew_2515at 2959.216 kb on - strand, within Shew_2515at 2959.216 kb on - strand, within Shew_2515at 2959.216 kb on - strand, within Shew_2515at 2959.277 kb on + strand, within Shew_2515at 2959.282 kb on + strand, within Shew_2515at 2959.411 kb on - strandat 2959.433 kb on - strandat 2961.299 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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2,959,193 + Shew_2515 0.72 -1.0
2,959,216 - Shew_2515 0.76 -0.3
2,959,216 - Shew_2515 0.76 -0.4
2,959,216 - Shew_2515 0.76 -1.0
2,959,277 + Shew_2515 0.86 +0.1
2,959,282 + Shew_2515 0.87 -0.4
2,959,411 - +2.0
2,959,433 - +0.9
2,961,299 + +1.6

Or see this region's nucleotide sequence