Strain Fitness in Shewanella loihica PV-4 around Shew_2511

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2510 and cysS are separated by 159 nucleotidescysS and Shew_2512 are separated by 246 nucleotidesShew_2512 and Shew_2513 are separated by 18 nucleotides Shew_2510: Shew_2510 - methylenetetrahydrofolate dehydrogenase (NADP(+)) (RefSeq), at 2,953,769 to 2,954,623 _2510 Shew_2511: cysS - cysteinyl-tRNA synthetase (RefSeq), at 2,954,783 to 2,956,162 cysS Shew_2512: Shew_2512 - peptidylprolyl isomerase (RefSeq), at 2,956,409 to 2,956,921 _2512 Shew_2513: Shew_2513 - UDP-2,3-diacylglucosamine hydrolase (RefSeq), at 2,956,940 to 2,957,668 _2513 Position (kb) 2954 2955 2956 2957Strain fitness (log2 ratio) -1 0 1at 2954.672 kb on + strandat 2956.326 kb on - strandat 2956.393 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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2,954,672 + +0.3
2,956,326 - +0.3
2,956,393 + +0.7

Or see this region's nucleotide sequence