Strain Fitness in Shewanella loihica PV-4 around Shew_2472

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2471 and Shew_2472 are separated by 79 nucleotidesShew_2472 and Shew_2473 are separated by 59 nucleotides Shew_2471: Shew_2471 - hypothetical protein (RefSeq), at 2,905,888 to 2,907,723 _2471 Shew_2472: Shew_2472 - diguanylate cyclase (RefSeq), at 2,907,803 to 2,908,312 _2472 Shew_2473: Shew_2473 - tetratricopeptide domain-containing protein (RefSeq), at 2,908,372 to 2,909,619 _2473 Position (kb) 2907 2908 2909Strain fitness (log2 ratio) -1 0 1at 2907.168 kb on + strand, within Shew_2471at 2907.284 kb on + strand, within Shew_2471at 2907.354 kb on + strand, within Shew_2471at 2907.419 kb on - strand, within Shew_2471at 2907.544 kb on - strandat 2909.204 kb on + strand, within Shew_2473

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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2,907,168 + Shew_2471 0.70 +0.6
2,907,284 + Shew_2471 0.76 +1.0
2,907,354 + Shew_2471 0.80 -0.3
2,907,419 - Shew_2471 0.83 +0.2
2,907,544 - +1.7
2,909,204 + Shew_2473 0.67 -0.3

Or see this region's nucleotide sequence