Strain Fitness in Shewanella loihica PV-4 around Shew_2464

Experiment: LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShew_2463 and Shew_2464 are separated by 167 nucleotidesShew_2464 and Shew_2465 are separated by 104 nucleotides Shew_2463: Shew_2463 - hypothetical protein (RefSeq), at 2,897,880 to 2,900,201 _2463 Shew_2464: Shew_2464 - hypothetical protein (RefSeq), at 2,900,369 to 2,901,133 _2464 Shew_2465: Shew_2465 - LysR family transcriptional regulator (RefSeq), at 2,901,238 to 2,902,167 _2465 Position (kb) 2900 2901 2902Strain fitness (log2 ratio) -1 0 1 2at 2899.540 kb on + strand, within Shew_2463at 2899.609 kb on - strand, within Shew_2463at 2899.869 kb on - strand, within Shew_2463at 2900.147 kb on + strandat 2900.417 kb on + strandat 2900.471 kb on + strand, within Shew_2464at 2900.614 kb on + strand, within Shew_2464at 2901.015 kb on - strand, within Shew_2464at 2901.095 kb on + strandat 2901.149 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB
remove
2,899,540 + Shew_2463 0.71 -0.1
2,899,609 - Shew_2463 0.74 +0.8
2,899,869 - Shew_2463 0.86 -1.1
2,900,147 + -0.2
2,900,417 + +2.0
2,900,471 + Shew_2464 0.13 +0.9
2,900,614 + Shew_2464 0.32 +0.3
2,901,015 - Shew_2464 0.84 +0.7
2,901,095 + +0.1
2,901,149 - +0.4

Or see this region's nucleotide sequence