Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_2458 and Shew_2459 are separated by 243 nucleotides Shew_2459 and Shew_2460 are separated by 106 nucleotides Shew_2460 and Shew_2461 are separated by 110 nucleotides
Shew_2458: Shew_2458 - glutathione S-transferase domain-containing protein (RefSeq), at 2,890,901 to 2,891,761
_2458
Shew_2459: Shew_2459 - hypothetical protein (RefSeq), at 2,892,005 to 2,892,352
_2459
Shew_2460: Shew_2460 - hypothetical protein (RefSeq), at 2,892,459 to 2,893,502
_2460
Shew_2461: Shew_2461 - MORN repeat-containing protein (RefSeq), at 2,893,613 to 2,895,931
_2461
Position (kb)
2892
2893
2894 Strain fitness (log2 ratio)
-2
-1
0
1 at 2891.696 kb on + strand at 2891.728 kb on - strand at 2891.751 kb on - strand at 2891.837 kb on + strand at 2892.242 kb on + strand, within Shew_2459 at 2892.465 kb on - strand at 2892.581 kb on + strand, within Shew_2460 at 2892.582 kb on - strand, within Shew_2460 at 2892.589 kb on - strand, within Shew_2460 at 2893.229 kb on - strand, within Shew_2460 at 2893.461 kb on + strand at 2893.837 kb on + strand at 2894.040 kb on + strand, within Shew_2461 at 2894.040 kb on + strand, within Shew_2461 at 2894.048 kb on - strand, within Shew_2461 at 2894.131 kb on - strand, within Shew_2461 at 2894.293 kb on + strand, within Shew_2461 at 2894.307 kb on - strand, within Shew_2461 at 2894.448 kb on + strand, within Shew_2461
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 2,891,696 + -0.2 2,891,728 - -0.0 2,891,751 - +0.5 2,891,837 + +0.3 2,892,242 + Shew_2459 0.68 -0.2 2,892,465 - +0.2 2,892,581 + Shew_2460 0.12 +0.7 2,892,582 - Shew_2460 0.12 +0.8 2,892,589 - Shew_2460 0.12 +0.9 2,893,229 - Shew_2460 0.74 +0.5 2,893,461 + +0.2 2,893,837 + -0.0 2,894,040 + Shew_2461 0.18 -0.7 2,894,040 + Shew_2461 0.18 -0.2 2,894,048 - Shew_2461 0.19 -0.6 2,894,131 - Shew_2461 0.22 -0.8 2,894,293 + Shew_2461 0.29 -1.2 2,894,307 - Shew_2461 0.30 -1.2 2,894,448 + Shew_2461 0.36 -1.9
Or see this region's nucleotide sequence