Strain Fitness in Shewanella loihica PV-4 around Shew_2366

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2364 and Shew_2365 are separated by 106 nucleotidesShew_2365 and Shew_2366 are separated by 99 nucleotidesShew_2366 and Shew_2367 are separated by 102 nucleotidesShew_2367 and Shew_2368 are separated by 138 nucleotides Shew_2364: Shew_2364 - aldehyde dehydrogenase (RefSeq), at 2,764,957 to 2,766,522 _2364 Shew_2365: Shew_2365 - GntR family transcriptional regulator (RefSeq), at 2,766,629 to 2,767,300 _2365 Shew_2366: Shew_2366 - 3-oxoacyl-(acyl carrier protein) synthase III (RefSeq), at 2,767,400 to 2,768,467 _2366 Shew_2367: Shew_2367 - hypothetical protein (RefSeq), at 2,768,570 to 2,769,160 _2367 Shew_2368: Shew_2368 - exonuclease, RNase T and DNA polymerase III (RefSeq), at 2,769,299 to 2,769,979 _2368 Position (kb) 2767 2768 2769Strain fitness (log2 ratio) -2 -1 0 1at 2766.504 kb on - strandat 2766.783 kb on + strand, within Shew_2365at 2767.485 kb on + strandat 2767.776 kb on - strand, within Shew_2366at 2768.041 kb on - strand, within Shew_2366at 2768.565 kb on - strandat 2768.668 kb on + strand, within Shew_2367at 2768.880 kb on - strand, within Shew_2367at 2768.994 kb on + strand, within Shew_2367at 2769.181 kb on + strandat 2769.189 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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2,766,504 - -0.2
2,766,783 + Shew_2365 0.23 -2.4
2,767,485 + +0.3
2,767,776 - Shew_2366 0.35 -0.9
2,768,041 - Shew_2366 0.60 +0.6
2,768,565 - +1.1
2,768,668 + Shew_2367 0.17 -0.4
2,768,880 - Shew_2367 0.52 +1.3
2,768,994 + Shew_2367 0.72 +0.2
2,769,181 + +1.0
2,769,189 - -0.7

Or see this region's nucleotide sequence