Strain Fitness in Shewanella loihica PV-4 around Shew_2321

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2319 and Shew_2320 are separated by 4 nucleotidesShew_2320 and Shew_2321 are separated by 157 nucleotidesShew_2321 and Shew_2322 are separated by 344 nucleotides Shew_2319: Shew_2319 - serine O-acetyltransferase (RefSeq), at 2,714,471 to 2,715,292 _2319 Shew_2320: Shew_2320 - RNA methyltransferase (RefSeq), at 2,715,297 to 2,716,055 _2320 Shew_2321: Shew_2321 - inositol monophosphatase (RefSeq), at 2,716,213 to 2,717,016 _2321 Shew_2322: Shew_2322 - NnrS family protein (RefSeq), at 2,717,361 to 2,718,533 _2322 Position (kb) 2716 2717 2718Strain fitness (log2 ratio) -1 0 1at 2715.767 kb on - strand, within Shew_2320at 2716.113 kb on - strandat 2717.445 kb on + strandat 2717.448 kb on + strandat 2717.621 kb on - strand, within Shew_2322

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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2,715,767 - Shew_2320 0.62 +0.9
2,716,113 - +0.9
2,717,445 + -0.4
2,717,448 + -0.7
2,717,621 - Shew_2322 0.22 -0.7

Or see this region's nucleotide sequence