Strain Fitness in Shewanella loihica PV-4 around Shew_2309

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2308 and Shew_2309 are separated by 2 nucleotidesShew_2309 and Shew_2310 are separated by 144 nucleotidesShew_2310 and Shew_2311 are separated by 201 nucleotides Shew_2308: Shew_2308 - aspartate-semialdehyde dehydrogenase (RefSeq), at 2,705,710 to 2,706,726 _2308 Shew_2309: Shew_2309 - D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding (RefSeq), at 2,706,729 to 2,707,859 _2309 Shew_2310: Shew_2310 - nucleoside-diphosphate kinase (RefSeq), at 2,708,004 to 2,708,435 _2310 Shew_2311: Shew_2311 - hypothetical protein (RefSeq), at 2,708,637 to 2,708,828 _2311 Position (kb) 2706 2707 2708Strain fitness (log2 ratio) -1 0 1at 2707.972 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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2,707,972 - +0.6

Or see this region's nucleotide sequence