Strain Fitness in Shewanella loihica PV-4 around Shew_2283
Experiment: LB
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | LB |
---|---|---|---|---|---|
remove | |||||
2,668,138 | - | Shew_2283 | 0.44 | -1.1 | |
2,668,280 | - | Shew_2283 | 0.57 | -1.8 | |
2,668,638 | + | Shew_2283 | 0.88 | -0.6 | |
2,668,638 | + | Shew_2283 | 0.88 | +0.7 | |
2,668,737 | + | -0.6 | |||
2,669,009 | + | -0.1 | |||
2,669,010 | - | +0.2 | |||
2,669,067 | - | -0.5 | |||
2,669,156 | + | Shew_2284 | 0.39 | -0.4 | |
2,669,164 | - | Shew_2284 | 0.42 | +0.8 | |
2,669,170 | + | Shew_2284 | 0.45 | +0.3 | |
2,669,179 | + | Shew_2284 | 0.49 | -0.3 | |
2,669,365 | + | -0.0 |
Or see this region's nucleotide sequence