Strain Fitness in Shewanella loihica PV-4 around Shew_2283

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2282 and Shew_2283 are separated by 137 nucleotidesShew_2283 and Shew_2284 are separated by 288 nucleotidesShew_2284 and Shew_2285 are separated by 31 nucleotides Shew_2282: Shew_2282 - Fis family transcriptional regulator (RefSeq), at 2,665,963 to 2,667,486 _2282 Shew_2283: Shew_2283 - porin (RefSeq), at 2,667,624 to 2,668,781 _2283 Shew_2284: Shew_2284 - hypothetical protein (RefSeq), at 2,669,070 to 2,669,291 _2284 Shew_2285: Shew_2285 - UDP-glucose 4-epimerase (RefSeq), at 2,669,323 to 2,670,378 _2285 Position (kb) 2667 2668 2669Strain fitness (log2 ratio) -2 -1 0 1at 2668.138 kb on - strand, within Shew_2283at 2668.280 kb on - strand, within Shew_2283at 2668.638 kb on + strand, within Shew_2283at 2668.638 kb on + strand, within Shew_2283at 2668.737 kb on + strandat 2669.009 kb on + strandat 2669.010 kb on - strandat 2669.067 kb on - strandat 2669.156 kb on + strand, within Shew_2284at 2669.164 kb on - strand, within Shew_2284at 2669.170 kb on + strand, within Shew_2284at 2669.179 kb on + strand, within Shew_2284at 2669.365 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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2,668,138 - Shew_2283 0.44 -1.1
2,668,280 - Shew_2283 0.57 -1.8
2,668,638 + Shew_2283 0.88 -0.6
2,668,638 + Shew_2283 0.88 +0.7
2,668,737 + -0.6
2,669,009 + -0.1
2,669,010 - +0.2
2,669,067 - -0.5
2,669,156 + Shew_2284 0.39 -0.4
2,669,164 - Shew_2284 0.42 +0.8
2,669,170 + Shew_2284 0.45 +0.3
2,669,179 + Shew_2284 0.49 -0.3
2,669,365 + -0.0

Or see this region's nucleotide sequence