Strain Fitness in Shewanella loihica PV-4 around Shew_2220

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2219 and Shew_2220 are separated by 58 nucleotidesShew_2220 and Shew_2221 are separated by 17 nucleotidesShew_2221 and Shew_2222 are separated by 93 nucleotidesShew_2222 and Shew_2223 are separated by 119 nucleotides Shew_2219: Shew_2219 - hypothetical protein (RefSeq), at 2,591,703 to 2,592,629 _2219 Shew_2220: Shew_2220 - hypothetical protein (RefSeq), at 2,592,688 to 2,593,062 _2220 Shew_2221: Shew_2221 - hypothetical protein (RefSeq), at 2,593,080 to 2,593,373 _2221 Shew_2222: Shew_2222 - hypothetical protein (RefSeq), at 2,593,467 to 2,593,817 _2222 Shew_2223: Shew_2223 - YceI family protein (RefSeq), at 2,593,937 to 2,594,524 _2223 Position (kb) 2592 2593 2594Strain fitness (log2 ratio) -1 0 1 2at 2591.800 kb on + strand, within Shew_2219at 2591.859 kb on + strand, within Shew_2219at 2591.867 kb on - strand, within Shew_2219at 2591.867 kb on - strand, within Shew_2219at 2592.423 kb on + strand, within Shew_2219at 2593.629 kb on + strand, within Shew_2222

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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2,591,800 + Shew_2219 0.10 -0.5
2,591,859 + Shew_2219 0.17 +0.7
2,591,867 - Shew_2219 0.18 +0.8
2,591,867 - Shew_2219 0.18 -0.6
2,592,423 + Shew_2219 0.78 +0.4
2,593,629 + Shew_2222 0.46 +2.4

Or see this region's nucleotide sequence