Strain Fitness in Shewanella loihica PV-4 around Shew_2188
Experiment: LB
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | LB |
---|---|---|---|---|---|
remove | |||||
2,545,834 | + | Shew_2187 | 0.26 | -2.4 | |
2,546,011 | + | Shew_2187 | 0.42 | +0.2 | |
2,546,152 | + | Shew_2187 | 0.55 | -0.9 | |
2,546,915 | - | Shew_2188 | 0.11 | -0.5 | |
2,547,731 | + | Shew_2188 | 0.59 | -2.3 | |
2,548,003 | + | Shew_2188 | 0.76 | -0.3 | |
2,548,139 | - | Shew_2188 | 0.84 | +0.4 | |
2,548,149 | + | Shew_2188 | 0.84 | -0.6 | |
2,548,236 | + | Shew_2188 | 0.89 | -0.6 | |
2,548,777 | + | Shew_2189 | 0.18 | -0.2 | |
2,548,841 | - | Shew_2189 | 0.25 | +0.6 | |
2,548,843 | + | Shew_2189 | 0.25 | +0.2 |
Or see this region's nucleotide sequence