Strain Fitness in Shewanella loihica PV-4 around Shew_2188

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2187 and Shew_2188 are separated by 90 nucleotidesShew_2188 and Shew_2189 are separated by 198 nucleotides Shew_2187: Shew_2187 - ribonuclease D (RefSeq), at 2,545,541 to 2,546,647 _2187 Shew_2188: Shew_2188 - long-chain-fatty-acid--CoA ligase (RefSeq), at 2,546,738 to 2,548,411 _2188 Shew_2189: Shew_2189 - alpha/beta hydrolase fold (RefSeq), at 2,548,610 to 2,549,545 _2189 Position (kb) 2546 2547 2548 2549Strain fitness (log2 ratio) -2 -1 0 1at 2545.834 kb on + strand, within Shew_2187at 2546.011 kb on + strand, within Shew_2187at 2546.152 kb on + strand, within Shew_2187at 2546.915 kb on - strand, within Shew_2188at 2547.731 kb on + strand, within Shew_2188at 2548.003 kb on + strand, within Shew_2188at 2548.139 kb on - strand, within Shew_2188at 2548.149 kb on + strand, within Shew_2188at 2548.236 kb on + strand, within Shew_2188at 2548.777 kb on + strand, within Shew_2189at 2548.841 kb on - strand, within Shew_2189at 2548.843 kb on + strand, within Shew_2189

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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2,545,834 + Shew_2187 0.26 -2.4
2,546,011 + Shew_2187 0.42 +0.2
2,546,152 + Shew_2187 0.55 -0.9
2,546,915 - Shew_2188 0.11 -0.5
2,547,731 + Shew_2188 0.59 -2.3
2,548,003 + Shew_2188 0.76 -0.3
2,548,139 - Shew_2188 0.84 +0.4
2,548,149 + Shew_2188 0.84 -0.6
2,548,236 + Shew_2188 0.89 -0.6
2,548,777 + Shew_2189 0.18 -0.2
2,548,841 - Shew_2189 0.25 +0.6
2,548,843 + Shew_2189 0.25 +0.2

Or see this region's nucleotide sequence