Strain Fitness in Shewanella loihica PV-4 around Shew_2172

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2171 and Shew_2172 are separated by 70 nucleotidesShew_2172 and Shew_2173 overlap by 4 nucleotides Shew_2171: Shew_2171 - peptidase T2, asparaginase 2 (RefSeq), at 2,526,494 to 2,527,540 _2171 Shew_2172: Shew_2172 - surface antigen (D15) (RefSeq), at 2,527,611 to 2,529,521 _2172 Shew_2173: Shew_2173 - hypothetical protein (RefSeq), at 2,529,518 to 2,533,417 _2173 Position (kb) 2527 2528 2529 2530Strain fitness (log2 ratio) -1 0 1at 2526.995 kb on - strand, within Shew_2171at 2527.162 kb on + strand, within Shew_2171at 2527.230 kb on - strand, within Shew_2171at 2527.271 kb on - strand, within Shew_2171at 2527.365 kb on + strand, within Shew_2171at 2527.522 kb on + strandat 2527.820 kb on + strand, within Shew_2172

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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2,526,995 - Shew_2171 0.48 +0.8
2,527,162 + Shew_2171 0.64 +0.7
2,527,230 - Shew_2171 0.70 -0.5
2,527,271 - Shew_2171 0.74 +0.4
2,527,365 + Shew_2171 0.83 +0.8
2,527,522 + +0.5
2,527,820 + Shew_2172 0.11 -0.8

Or see this region's nucleotide sequence