Strain Fitness in Shewanella loihica PV-4 around Shew_1950

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_1949 and Shew_1950 are separated by 130 nucleotidesShew_1950 and Shew_1951 are separated by 112 nucleotides Shew_1949: Shew_1949 - DNA gyrase, A subunit (RefSeq), at 2,251,792 to 2,254,431 _1949 Shew_1950: Shew_1950 - phosphoserine aminotransferase (RefSeq), at 2,254,562 to 2,255,656 _1950 Shew_1951: Shew_1951 - aromatic amino acid aminotransferase (RefSeq), at 2,255,769 to 2,256,959 _1951 Position (kb) 2254 2255 2256Strain fitness (log2 ratio) -1 0 1at 2256.127 kb on + strand, within Shew_1951at 2256.135 kb on - strand, within Shew_1951at 2256.145 kb on - strand, within Shew_1951at 2256.523 kb on + strand, within Shew_1951

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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2,256,127 + Shew_1951 0.30 +0.3
2,256,135 - Shew_1951 0.31 -1.6
2,256,145 - Shew_1951 0.32 -0.6
2,256,523 + Shew_1951 0.63 -1.7

Or see this region's nucleotide sequence