Strain Fitness in Shewanella loihica PV-4 around Shew_1947

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_1946 and Shew_1947 are separated by 480 nucleotidesShew_1947 and Shew_1948 overlap by 8 nucleotides Shew_1946: Shew_1946 - ribonucleotide-diphosphate reductase subunit alpha (RefSeq), at 2,247,269 to 2,249,557 _1946 Shew_1947: Shew_1947 - HAD family hydrolase (RefSeq), at 2,250,038 to 2,250,757 _1947 Shew_1948: Shew_1948 - 3-demethylubiquinone-9 3-methyltransferase (RefSeq), at 2,250,750 to 2,251,538 _1948 Position (kb) 2250 2251Strain fitness (log2 ratio) -1 0 1at 2250.036 kb on + strandat 2250.104 kb on - strandat 2250.104 kb on - strandat 2250.275 kb on - strand, within Shew_1947at 2251.603 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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2,250,036 + +0.1
2,250,104 - -0.5
2,250,104 - +0.3
2,250,275 - Shew_1947 0.33 +1.1
2,251,603 + +0.4

Or see this region's nucleotide sequence