Strain Fitness in Shewanella loihica PV-4 around Shew_1877

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_1876 and Shew_1877 are separated by 527 nucleotidesShew_1877 and Shew_1878 are separated by 114 nucleotides Shew_1876: Shew_1876 - alpha-glucosidase (RefSeq), at 2,159,901 to 2,162,024 _1876 Shew_1877: Shew_1877 - glutathione-dependent formaldehyde-activating, GFA (RefSeq), at 2,162,552 to 2,162,956 _1877 Shew_1878: Shew_1878 - 2-nitropropane dioxygenase, NPD (RefSeq), at 2,163,071 to 2,164,156 _1878 Position (kb) 2162 2163Strain fitness (log2 ratio) -1 0 1 2at 2161.554 kb on + strand, within Shew_1876at 2161.891 kb on - strandat 2162.411 kb on + strandat 2162.603 kb on + strand, within Shew_1877at 2162.936 kb on - strandat 2163.102 kb on + strandat 2163.148 kb on - strandat 2163.169 kb on + strandat 2163.189 kb on + strand, within Shew_1878at 2163.669 kb on - strand, within Shew_1878at 2163.769 kb on - strand, within Shew_1878

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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2,161,554 + Shew_1876 0.78 +0.9
2,161,891 - +0.3
2,162,411 + -0.7
2,162,603 + Shew_1877 0.13 +0.9
2,162,936 - +0.3
2,163,102 + +0.4
2,163,148 - +0.3
2,163,169 + +0.0
2,163,189 + Shew_1878 0.11 +0.8
2,163,669 - Shew_1878 0.55 +2.7
2,163,769 - Shew_1878 0.64 +0.1

Or see this region's nucleotide sequence