Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_1841 and Shew_1842 are separated by 169 nucleotides Shew_1842 and Shew_1843 are separated by 169 nucleotides Shew_1843 and Shew_1844 are separated by 71 nucleotides
Shew_1841: Shew_1841 - peptidase M48, Ste24p (RefSeq), at 2,117,114 to 2,118,571
_1841
Shew_1842: Shew_1842 - SirA family protein (RefSeq), at 2,118,741 to 2,118,962
_1842
Shew_1843: Shew_1843 - hypothetical protein (RefSeq), at 2,119,132 to 2,120,232
_1843
Shew_1844: Shew_1844 - chromosome replication initiation inhibitor protein (RefSeq), at 2,120,304 to 2,121,191
_1844
Position (kb)
2119
2120
2121 Strain fitness (log2 ratio)
-1
0
1 at 2118.148 kb on + strand, within Shew_1841 at 2118.842 kb on + strand, within Shew_1842 at 2119.479 kb on - strand, within Shew_1843 at 2120.653 kb on - strand, within Shew_1844 at 2120.687 kb on - strand, within Shew_1844 at 2120.766 kb on + strand, within Shew_1844 at 2120.774 kb on - strand, within Shew_1844 at 2120.800 kb on - strand, within Shew_1844 at 2120.808 kb on - strand, within Shew_1844 at 2121.220 kb on + strand at 2121.220 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 2,118,148 + Shew_1841 0.71 +1.1 2,118,842 + Shew_1842 0.45 +1.5 2,119,479 - Shew_1843 0.32 -0.4 2,120,653 - Shew_1844 0.39 -0.1 2,120,687 - Shew_1844 0.43 +0.4 2,120,766 + Shew_1844 0.52 +0.6 2,120,774 - Shew_1844 0.53 +0.2 2,120,800 - Shew_1844 0.56 -1.4 2,120,808 - Shew_1844 0.57 +0.6 2,121,220 + -0.0 2,121,220 + +0.3
Or see this region's nucleotide sequence