Strain Fitness in Shewanella loihica PV-4 around Shew_1830

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_1828 and Shew_1829 are separated by 168 nucleotidesShew_1829 and Shew_1830 are separated by 136 nucleotidesShew_1830 and Shew_1831 are separated by 97 nucleotides Shew_1828: Shew_1828 - peptidoglycan binding domain-containing protein (RefSeq), at 2,103,707 to 2,105,083 _1828 Shew_1829: Shew_1829 - hypothetical protein (RefSeq), at 2,105,252 to 2,105,743 _1829 Shew_1830: Shew_1830 - ribosomal protein L25 (RefSeq), at 2,105,880 to 2,106,167 _1830 Shew_1831: Shew_1831 - hypothetical protein (RefSeq), at 2,106,265 to 2,107,797 _1831 Position (kb) 2105 2106 2107Strain fitness (log2 ratio) -1 0 1at 2104.886 kb on - strand, within Shew_1828at 2105.242 kb on - strandat 2106.811 kb on + strand, within Shew_1831

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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2,104,886 - Shew_1828 0.86 -1.0
2,105,242 - -0.5
2,106,811 + Shew_1831 0.36 +0.7

Or see this region's nucleotide sequence