Strain Fitness in Shewanella loihica PV-4 around Shew_1826

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntuvrC and Shew_1826 are separated by 47 nucleotidesShew_1826 and Shew_R0061 are separated by 140 nucleotidesShew_R0061 and Shew_R0062 are separated by 12 nucleotidesShew_R0062 and Shew_R0063 are separated by 39 nucleotidesShew_R0063 and Shew_1827 are separated by 205 nucleotides Shew_1825: uvrC - excinuclease ABC subunit C (RefSeq), at 2,099,943 to 2,101,772 uvrC Shew_1826: Shew_1826 - CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (RefSeq), at 2,101,820 to 2,102,377 _1826 Shew_R0061: Shew_R0061 - tRNA-Gly (RefSeq), at 2,102,518 to 2,102,593 _R0061 Shew_R0062: Shew_R0062 - tRNA-Cys (RefSeq), at 2,102,606 to 2,102,679 _R0062 Shew_R0063: Shew_R0063 - tRNA-Leu (RefSeq), at 2,102,719 to 2,102,805 _R0063 Shew_1827: Shew_1827 - methylation site containing protein (RefSeq), at 2,103,011 to 2,103,577 _1827 Position (kb) 2101 2102 2103Strain fitness (log2 ratio) -1 0 1at 2100.978 kb on + strand, within uvrCat 2101.073 kb on + strand, within uvrCat 2101.496 kb on - strand, within uvrCat 2103.027 kb on + strandat 2103.027 kb on + strandat 2103.035 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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2,100,978 + uvrC Shew_1825 0.57 +0.3
2,101,073 + uvrC Shew_1825 0.62 -0.2
2,101,496 - uvrC Shew_1825 0.85 -0.2
2,103,027 + +0.7
2,103,027 + -0.8
2,103,035 - +0.8

Or see this region's nucleotide sequence