Strain Fitness in Shewanella loihica PV-4 around Shew_1817

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_1815 and Shew_1816 are separated by 185 nucleotidesShew_1816 and Shew_1817 are separated by 58 nucleotidesShew_1817 and Shew_1818 are separated by 67 nucleotides Shew_1815: Shew_1815 - hypothetical protein (RefSeq), at 2,087,345 to 2,089,198 _1815 Shew_1816: Shew_1816 - ribosome modulation factor (RefSeq), at 2,089,384 to 2,089,560 _1816 Shew_1817: Shew_1817 - 3-hydroxydecanoyl-(acyl carrier protein) dehydratase (RefSeq), at 2,089,619 to 2,090,134 _1817 Shew_1818: Shew_1818 - ATP-dependent protease (RefSeq), at 2,090,202 to 2,091,911 _1818 Position (kb) 2089 2090 2091Strain fitness (log2 ratio) -2 -1 0 1at 2088.826 kb on + strand, within Shew_1815at 2088.920 kb on + strand, within Shew_1815at 2089.380 kb on - strandat 2090.621 kb on + strand, within Shew_1818

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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2,088,826 + Shew_1815 0.80 -2.7
2,088,920 + Shew_1815 0.85 -0.1
2,089,380 - +0.2
2,090,621 + Shew_1818 0.25 -1.2

Or see this region's nucleotide sequence