Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_1744 and Shew_1745 are separated by 26 nucleotides Shew_1745 and Shew_1746 are separated by 47 nucleotides Shew_1746 and Shew_1747 are separated by 135 nucleotides Shew_1747 and Shew_1748 are separated by 323 nucleotides
Shew_1744: Shew_1744 - GCN5-related N-acetyltransferase (RefSeq), at 1,993,686 to 1,994,291
_1744
Shew_1745: Shew_1745 - GCN5-related N-acetyltransferase (RefSeq), at 1,994,318 to 1,994,770
_1745
Shew_1746: Shew_1746 - hypothetical protein (RefSeq), at 1,994,818 to 1,995,216
_1746
Shew_1747: Shew_1747 - hypothetical protein (RefSeq), at 1,995,352 to 1,995,741
_1747
Shew_1748: Shew_1748 - hypothetical protein (RefSeq), at 1,996,065 to 1,996,301
_1748
Position (kb)
1994
1995
1996 Strain fitness (log2 ratio)
-2
-1
0
1 at 1993.856 kb on + strand, within Shew_1744 at 1993.892 kb on - strand, within Shew_1744 at 1994.143 kb on - strand, within Shew_1744 at 1994.537 kb on + strand, within Shew_1745 at 1994.553 kb on + strand, within Shew_1745 at 1994.652 kb on - strand, within Shew_1745 at 1994.695 kb on + strand, within Shew_1745 at 1994.703 kb on - strand, within Shew_1745 at 1994.788 kb on + strand at 1994.812 kb on + strand at 1994.820 kb on - strand at 1994.820 kb on - strand at 1995.305 kb on + strand at 1995.797 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,993,856 + Shew_1744 0.28 +0.3 1,993,892 - Shew_1744 0.34 -0.4 1,994,143 - Shew_1744 0.75 -2.6 1,994,537 + Shew_1745 0.48 -0.0 1,994,553 + Shew_1745 0.52 +1.3 1,994,652 - Shew_1745 0.74 +1.0 1,994,695 + Shew_1745 0.83 +0.3 1,994,703 - Shew_1745 0.85 -0.2 1,994,788 + -0.1 1,994,812 + +0.8 1,994,820 - +0.6 1,994,820 - -1.3 1,995,305 + +0.4 1,995,797 + -0.0
Or see this region's nucleotide sequence