Strain Fitness in Shewanella loihica PV-4 around Shew_1638

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_1637 and Shew_1638 are separated by 33 nucleotidesShew_1638 and Shew_1639 are separated by 5 nucleotides Shew_1637: Shew_1637 - DNA internalization-related competence protein ComEC/Rec2 (RefSeq), at 1,872,569 to 1,874,854 _1637 Shew_1638: Shew_1638 - lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA (RefSeq), at 1,874,888 to 1,876,702 _1638 Shew_1639: Shew_1639 - tetraacyldisaccharide 4'-kinase (RefSeq), at 1,876,708 to 1,877,724 _1639 Position (kb) 1874 1875 1876 1877Strain fitness (log2 ratio) -1 0 1at 1873.982 kb on - strand, within Shew_1637at 1874.029 kb on + strand, within Shew_1637at 1874.462 kb on + strand, within Shew_1637

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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1,873,982 - Shew_1637 0.62 -0.1
1,874,029 + Shew_1637 0.64 +0.2
1,874,462 + Shew_1637 0.83 +1.4

Or see this region's nucleotide sequence