Strain Fitness in Shewanella loihica PV-4 around Shew_1551

Experiment: LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShew_1550 and Shew_1551 are separated by 62 nucleotidesShew_1551 and Shew_1552 are separated by 123 nucleotidesShew_1552 and Shew_1553 are separated by 39 nucleotides Shew_1550: Shew_1550 - FAD linked oxidase domain-containing protein (RefSeq), at 1,779,880 to 1,782,960 _1550 Shew_1551: Shew_1551 - hypothetical protein (RefSeq), at 1,783,023 to 1,783,472 _1551 Shew_1552: Shew_1552 - MarR family transcriptional regulator (RefSeq), at 1,783,596 to 1,784,012 _1552 Shew_1553: Shew_1553 - hypothetical protein (RefSeq), at 1,784,052 to 1,784,534 _1553 Position (kb) 1783 1784Strain fitness (log2 ratio) -2 -1 0 1at 1782.391 kb on + strand, within Shew_1550at 1782.539 kb on + strand, within Shew_1550at 1782.906 kb on + strandat 1783.002 kb on - strandat 1783.705 kb on - strand, within Shew_1552at 1784.006 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB
remove
1,782,391 + Shew_1550 0.81 -2.3
1,782,539 + Shew_1550 0.86 +0.0
1,782,906 + -1.5
1,783,002 - +1.2
1,783,705 - Shew_1552 0.26 +1.4
1,784,006 + -0.2

Or see this region's nucleotide sequence