Strain Fitness in Shewanella loihica PV-4 around Shew_1504

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_1503 and Shew_1504 are separated by 131 nucleotidesShew_1504 and Shew_1505 are separated by 71 nucleotides Shew_1503: Shew_1503 - oxidoreductase FAD-binding subunit (RefSeq), at 1,726,005 to 1,726,997 _1503 Shew_1504: Shew_1504 - GCN5-related N-acetyltransferase (RefSeq), at 1,727,129 to 1,727,560 _1504 Shew_1505: Shew_1505 - hypothetical protein (RefSeq), at 1,727,632 to 1,728,336 _1505 Position (kb) 1727 1728Strain fitness (log2 ratio) -1 0 1 2at 1726.183 kb on + strand, within Shew_1503at 1727.004 kb on - strandat 1727.192 kb on + strand, within Shew_1504at 1727.712 kb on - strand, within Shew_1505at 1727.827 kb on - strand, within Shew_1505at 1727.829 kb on + strand, within Shew_1505at 1727.837 kb on - strand, within Shew_1505at 1727.998 kb on - strand, within Shew_1505at 1728.188 kb on - strand, within Shew_1505

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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1,726,183 + Shew_1503 0.18 +0.1
1,727,004 - -0.0
1,727,192 + Shew_1504 0.15 -0.6
1,727,712 - Shew_1505 0.11 +2.0
1,727,827 - Shew_1505 0.28 -0.5
1,727,829 + Shew_1505 0.28 +0.3
1,727,837 - Shew_1505 0.29 -1.1
1,727,998 - Shew_1505 0.52 +0.0
1,728,188 - Shew_1505 0.79 +0.9

Or see this region's nucleotide sequence