Strain Fitness in Shewanella loihica PV-4 around Shew_1291

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntispG and Shew_1291 are separated by 153 nucleotidesShew_1291 and Shew_1292 are separated by 14 nucleotidesShew_1292 and Shew_1293 are separated by 11 nucleotides Shew_1290: ispG - 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (RefSeq), at 1,490,199 to 1,491,314 ispG Shew_1291: Shew_1291 - histidyl-tRNA synthetase (RefSeq), at 1,491,468 to 1,492,739 _1291 Shew_1292: Shew_1292 - tetratricopeptide TPR_4 (RefSeq), at 1,492,754 to 1,493,377 _1292 Shew_1293: Shew_1293 - outer membrane protein assembly complex subunit YfgL (RefSeq), at 1,493,389 to 1,494,576 _1293 Position (kb) 1491 1492 1493Strain fitness (log2 ratio) -1 0 1at 1491.366 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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1,491,366 + -0.4

Or see this region's nucleotide sequence