Strain Fitness in Shewanella loihica PV-4 around Shew_0928

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_0927 and Shew_0928 are separated by 270 nucleotidesShew_0928 and Shew_0929 are separated by 630 nucleotides Shew_0927: Shew_0927 - amidohydrolase 3 (RefSeq), at 1,057,371 to 1,059,119 _0927 Shew_0928: Shew_0928 - transposase IS116/IS110/IS902 family protein (RefSeq), at 1,059,390 to 1,060,403 _0928 Shew_0929: Shew_0929 - Ig family protein (RefSeq), at 1,061,034 to 1,064,111 _0929 Position (kb) 1059 1060 1061Strain fitness (log2 ratio) -1 0 1at 1058.666 kb on - strand, within Shew_0927at 1058.949 kb on + strandat 1060.983 kb on + strandat 1060.983 kb on + strandat 1060.991 kb on - strandat 1061.027 kb on - strandat 1061.098 kb on - strandat 1061.133 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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1,058,666 - Shew_0927 0.74 +0.3
1,058,949 + -0.2
1,060,983 + +0.2
1,060,983 + +0.1
1,060,991 - -0.1
1,061,027 - -1.1
1,061,098 - +0.1
1,061,133 - +0.0

Or see this region's nucleotide sequence