Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0913 and Shew_0914 are separated by 139 nucleotides Shew_0914 and Shew_0915 are separated by 140 nucleotides Shew_0915 and Shew_0916 overlap by 11 nucleotides Shew_0916 and Shew_0917 are separated by 160 nucleotides
Shew_0913: Shew_0913 - glyoxalase/bleomycin resistance protein/dioxygenase (RefSeq), at 1,033,654 to 1,034,076
_0913
Shew_0914: Shew_0914 - NADPH-dependent FMN reductase (RefSeq), at 1,034,216 to 1,034,821
_0914
Shew_0915: Shew_0915 - putative transcriptional regulator (RefSeq), at 1,034,962 to 1,035,618
_0915
Shew_0916: Shew_0916 - pseudouridine synthase (RefSeq), at 1,035,608 to 1,036,318
_0916
Shew_0917: Shew_0917 - LysR family transcriptional regulator (RefSeq), at 1,036,479 to 1,037,444
_0917
Position (kb)
1034
1035
1036 Strain fitness (log2 ratio)
-1
0
1
2 at 1034.177 kb on - strand at 1034.255 kb on - strand at 1034.335 kb on + strand, within Shew_0914 at 1034.343 kb on - strand, within Shew_0914 at 1034.486 kb on + strand, within Shew_0914 at 1034.565 kb on + strand, within Shew_0914 at 1034.615 kb on - strand, within Shew_0914 at 1034.695 kb on + strand, within Shew_0914 at 1035.682 kb on + strand, within Shew_0916 at 1035.842 kb on + strand, within Shew_0916 at 1036.023 kb on + strand, within Shew_0916 at 1036.138 kb on + strand, within Shew_0916 at 1036.146 kb on - strand, within Shew_0916 at 1036.153 kb on + strand, within Shew_0916
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,034,177 - -0.3 1,034,255 - +2.3 1,034,335 + Shew_0914 0.20 +0.6 1,034,343 - Shew_0914 0.21 +2.2 1,034,486 + Shew_0914 0.45 -0.2 1,034,565 + Shew_0914 0.58 +0.5 1,034,615 - Shew_0914 0.66 +0.2 1,034,695 + Shew_0914 0.79 +1.0 1,035,682 + Shew_0916 0.10 -1.6 1,035,842 + Shew_0916 0.33 -0.2 1,036,023 + Shew_0916 0.58 +0.1 1,036,138 + Shew_0916 0.75 -0.2 1,036,146 - Shew_0916 0.76 -0.5 1,036,153 + Shew_0916 0.77 -0.4
Or see this region's nucleotide sequence