Strain Fitness in Shewanella loihica PV-4 around Shew_0868

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_0867 and Shew_0868 are separated by 119 nucleotidesShew_0868 and rplU are separated by 275 nucleotidesrplU and rpmA are separated by 15 nucleotides Shew_0867: Shew_0867 - malate dehydrogenase (RefSeq), at 988,255 to 989,190 _0867 Shew_0868: Shew_0868 - trans-hexaprenyltranstransferase (RefSeq), at 989,310 to 990,281 _0868 Shew_0869: rplU - 50S ribosomal protein L21 (RefSeq), at 990,557 to 990,868 rplU Shew_0870: rpmA - 50S ribosomal protein L27 (RefSeq), at 990,884 to 991,138 rpmA Position (kb) 989 990 991Strain fitness (log2 ratio) -1 0 1at 988.750 kb on - strand, within Shew_0867

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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988,750 - Shew_0867 0.53 -0.8

Or see this region's nucleotide sequence