Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0863 and Shew_0864 are separated by 186 nucleotides Shew_0864 and Shew_0865 are separated by 114 nucleotides Shew_0865 and Shew_0866 are separated by 197 nucleotides
Shew_0863: Shew_0863 - ABC transporter-related protein (RefSeq), at 984,547 to 985,575
_0863
Shew_0864: Shew_0864 - Dyp-type peroxidase family protein (RefSeq), at 985,762 to 986,706
_0864
Shew_0865: Shew_0865 - cupin 2 domain-containing protein (RefSeq), at 986,821 to 987,279
_0865
Shew_0866: Shew_0866 - arginine repressor (RefSeq), at 987,477 to 987,947
_0866
Position (kb) 985
986
987 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 984.902 kb on - strand, within Shew_0863 at 984.951 kb on - strand, within Shew_0863 at 985.096 kb on - strand, within Shew_0863 at 985.096 kb on - strand, within Shew_0863 at 985.170 kb on + strand, within Shew_0863 at 985.192 kb on + strand, within Shew_0863 at 985.212 kb on + strand, within Shew_0863 at 985.282 kb on - strand, within Shew_0863 at 985.321 kb on + strand, within Shew_0863 at 985.421 kb on - strand, within Shew_0863 at 985.424 kb on + strand, within Shew_0863 at 985.430 kb on - strand, within Shew_0863 at 985.569 kb on + strand at 985.577 kb on - strand at 985.577 kb on - strand at 985.740 kb on - strand at 985.784 kb on + strand at 986.004 kb on + strand, within Shew_0864 at 986.889 kb on - strand, within Shew_0865 at 986.930 kb on + strand, within Shew_0865 at 987.027 kb on + strand, within Shew_0865 at 987.027 kb on + strand, within Shew_0865 at 987.027 kb on + strand, within Shew_0865 at 987.035 kb on - strand, within Shew_0865 at 987.035 kb on - strand, within Shew_0865 at 987.078 kb on - strand, within Shew_0865 at 987.080 kb on + strand, within Shew_0865 at 987.088 kb on - strand, within Shew_0865 at 987.308 kb on + strand at 987.384 kb on - strand at 987.434 kb on - strand at 987.451 kb on + strand at 987.459 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 984,902 - Shew_0863 0.34 -1.2 984,951 - Shew_0863 0.39 -1.1 985,096 - Shew_0863 0.53 -1.5 985,096 - Shew_0863 0.53 -1.3 985,170 + Shew_0863 0.61 +0.8 985,192 + Shew_0863 0.63 +0.9 985,212 + Shew_0863 0.65 +0.6 985,282 - Shew_0863 0.71 -0.0 985,321 + Shew_0863 0.75 +1.6 985,421 - Shew_0863 0.85 -0.2 985,424 + Shew_0863 0.85 +3.7 985,430 - Shew_0863 0.86 -1.4 985,569 + +2.0 985,577 - -0.2 985,577 - -1.0 985,740 - +1.0 985,784 + +1.0 986,004 + Shew_0864 0.26 +1.0 986,889 - Shew_0865 0.15 +0.0 986,930 + Shew_0865 0.24 -0.6 987,027 + Shew_0865 0.45 +0.3 987,027 + Shew_0865 0.45 -0.2 987,027 + Shew_0865 0.45 +0.5 987,035 - Shew_0865 0.47 -0.1 987,035 - Shew_0865 0.47 +0.7 987,078 - Shew_0865 0.56 +0.2 987,080 + Shew_0865 0.56 -0.7 987,088 - Shew_0865 0.58 -2.0 987,308 + -0.2 987,384 - +0.3 987,434 - +0.4 987,451 + -0.6 987,459 - -1.5
Or see this region's nucleotide sequence