Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0823 and Shew_0824 are separated by 131 nucleotides Shew_0824 and Shew_0825 are separated by 156 nucleotides Shew_0825 and Shew_0826 are separated by 330 nucleotides
Shew_0823: Shew_0823 - LysR family transcriptional regulator (RefSeq), at 946,201 to 947,106
_0823
Shew_0824: Shew_0824 - NAD-dependent epimerase/dehydratase (RefSeq), at 947,238 to 947,879
_0824
Shew_0825: Shew_0825 - ribose-5-phosphate isomerase A (RefSeq), at 948,036 to 948,695
_0825
Shew_0826: Shew_0826 - hypothetical protein (RefSeq), at 949,026 to 949,949
_0826
Position (kb) 948
949 Strain fitness (log2 ratio) -1
0
1 at 947.461 kb on + strand, within Shew_0824 at 947.588 kb on - strand, within Shew_0824 at 947.618 kb on + strand, within Shew_0824 at 947.788 kb on + strand, within Shew_0824 at 947.958 kb on + strand at 947.966 kb on - strand at 947.966 kb on - strand at 948.015 kb on + strand at 948.699 kb on - strand at 948.752 kb on + strand at 948.911 kb on + strand at 949.226 kb on + strand, within Shew_0826
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 947,461 + Shew_0824 0.35 -0.4 947,588 - Shew_0824 0.55 -1.0 947,618 + Shew_0824 0.59 -0.8 947,788 + Shew_0824 0.86 +0.2 947,958 + -0.6 947,966 - -0.4 947,966 - +0.1 948,015 + +0.5 948,699 - +0.4 948,752 + +0.4 948,911 + +0.2 949,226 + Shew_0826 0.22 +0.4
Or see this region's nucleotide sequence